Welcome to Tissue-Simulation-Toolkit’s documentation!

Contents

• Readme File
• Tissue-Simulation-Toolkit 2.0
  • Downloading and installing
  • Test the Tissue Simulation Toolkit
  • Troubleshooting
• How TST is built
  • C++
  • Tests
  • Dependencies
  • Python
  • MUSCLE3
• C++ unit tests
  • Mocking
  • Dependency inversion
  • Preprocessor-based mocking
• Cellular Potts - Extracellular Matrix coupled simulation
  • Simulation design
  • Implementation
  • Building the coupled simulation
  • Running locally
  • Developing
  • Going faster
• Source code documentation
  • General CPM and PDE code
  • ECM and adhesion code